PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004506077.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 318aa    MW: 36024.4 Da    PI: 4.9897
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004506077.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.94.2e-09135177754
                     HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     + ErrRR r+++++  Lr+l+P+      +K++Ka+i   Av Y+ +L
  XP_004506077.1 135 ISERRRRVRMKEKLYALRSLVPNI-----TKMDKASIIGDAVTYMYEL 177
                     78*********************7.....7**************8766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.52E-10126180No hitNo description
SuperFamilySSF474591.83E-15128196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.894128177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-15130195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.0E-11134183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-7134177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MDFYPETLAH INNDFELHDF IQDPNFDQFI SLIRGENEDT TIFNINSDLI NGNFIDNSFL  60
SYPAIPFDQC NNNNNNNNFV TPFDPTSSLS SFSCFDGEAK REIGEENDDG DNSPTTTTSV  120
DTKPRSKTDR SKTLISERRR RVRMKEKLYA LRSLVPNITK MDKASIIGDA VTYMYELKSQ  180
SKKLKSEVAG LEASLAVSKS HQGSIESSKK IQFSNNNGSI CKKIVQMDMF QVDERGFYVK  240
IVCNKGERVA ASLYKSLESL RGFNIQNSNL ATVSANFLLT FSLNMKESEP EMDLSNLKLW  300
VIDAFLNQGF EFTPSFRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004506077.10.0PREDICTED: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR
SwissprotQ0V7X42e-97FIT_ARATH; Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR
TrEMBLG7JN981e-167G7JN98_MEDTR; Transcription factor
STRINGGLYMA11G19850.11e-121(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36793358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.16e-91FER-like regulator of iron uptake